PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274535.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

M-type_MADS

Protein Properties

Length: 626aa MW: 70542.3 Da PI: 9.6825

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274535.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	38.3	1.8e-12	11	51	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ + t+ kRr g+lKK +ELS+ C+++v+ i+++++ XP_021274535.1 11 IANDNAKRLTLKKRRLGLLKKMSELSTRCGVNVCAIMYGPN 51 88999999*******************************97 PP
2	SRF-TF	26.2	1e-08	373	413	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+ r+ ++ k r g+lK + LS+LC a+++ ii +++ XP_021274535.1 373 IANDXARSLSLKKKRLGLLKQMSGLSTLCSANACAIIHGPN 413 899**********************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MTRKKVKLEW IANDNAKRLT LKKRRLGLLK KMSELSTRCG VNVCAIMYGP NEIEPMVWPS 60 HDVVQQQLAX FQSLFELERL KKMMNXETYL KEQVKKVREQ LMKYKKWNKE MEMAQLMYQI 120 NQGKGLNELN LCELNGLSLF VGKKIKEISK RIEFFQEVLF APTSALPDPH LPPQCLTVNE 180 MTQTSNGKAG DGDDWSTPTE PLLWSQYFID MMNKNELKLA SNRSIKKNMY HPPVGSAIDD 240 LGLPIHSLAS NFSVVADMGL PSTNFVAHGA SDMRLCHGRL VRGSNFGPFR SDIGLGLHHL 300 GGHLGNNSIR SEIGLPHLXH SNGNSSGVGE DIELPFNXKI LPNYFSPRAE EKERLNIYGI 360 IMMTRKKVKL EWIANDXARS LSLKKKRLGL LKQMSGLSTL CSANACAIIH GPNKIEPMVW 420 PSHDVVRQQL AQFXSLSKLE RLKKMMSQQT YVKVQVKKAK KQLMKYEKRN KEIEMAQLMD 480 QINQGKGLDE VNLSELNELS LFVDKKIKEI SKRIEFFQQG PFAPTSALPH XLPLPPQGLK 540 VNEMAXIGKL TXGGDCSTSV ETLLWNXCFI DMMNQDEPXL STNSSVRSDM GLPHHPLARS 600 ATNDLGLAIH SLTGNFSVAT DIGCIL

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MTRKKVKLEW IANDNAKRLT LKKRRLGLLK KMSELSTRCG VNVCAIMYGP NEIEPMVWPS  60
HDVVQQQLAX FQSLFELERL KKMMNXETYL KEQVKKVREQ LMKYKKWNKE MEMAQLMYQI  120
NQGKGLNELN LCELNGLSLF VGKKIKEISK RIEFFQEVLF APTSALPDPH LPPQCLTVNE  180
MTQTSNGKAG DGDDWSTPTE PLLWSQYFID MMNKNELKLA SNRSIKKNMY HPPVGSAIDD  240
LGLPIHSLAS NFSVVADMGL PSTNFVAHGA SDMRLCHGRL VRGSNFGPFR SDIGLGLHHL  300
GGHLGNNSIR SEIGLPHLXH SNGNSSGVGE DIELPFNXKI LPNYFSPRAE EKERLNIYGI  360
IMMTRKKVKL EWIANDXARS LSLKKKRLGL LKQMSGLSTL CSANACAIIH GPNKIEPMVW  420
PSHDVVRQQL AQFXSLSKLE RLKKMMSQQT YVKVQVKKAK KQLMKYEKRN KEIEMAQLMD  480
QINQGKGLDE VNLSELNELS LFVDKKIKEI SKRIEFFQQG PFAPTSALPH XLPLPPQGLK  540
VNEMAXIGKL TXGGDCSTSV ETLLWNXCFI DMMNQDEPXL STNSSVRSDM GLPHHPLARS  600
ATNDLGLAIH SLTGNFSVAT DIGCIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	25	RKKVKLEWIANDNAKRLTLKKRR
2	365	387	RKKVKLEWIANDNAKRLTLKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	2e-25	M-type_MADS family protein