PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021274513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 249aa MW: 28214.4 Da PI: 6.9078 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i n + rqvtfskRr g++KKAeELS+LCda+va++ifsstgkl+ y+s XP_021274513.1 9 KKIANATARQVTFSKRRRGLFKKAEELSILCDADVALVIFSSTGKLFQYAS 59 6899*********************************************86 PP | |||||||
2 | K-box | 48.6 | 3.4e-17 | 133 | 196 | 35 | 98 |
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +R++ Ge+L+ Ls++eLqqLe+ Le++l+++ +kK + ++++i++l +k +l een++L+ ++ XP_021274513.1 133 NRQMRGEELQGLSIEELQQLEKSLESGLSRVMEKKGQKIMREINDLERKGMQLMEENERLKLQI 196 59**********************************************************9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MAREKIQIKK IANATARQVT FSKRRRGLFK KAEELSILCD ADVALVIFSS TGKLFQYASS 60 SMVEILERRN LHSKNLEKLE QPSLELQLVE NGNQSMLSKE VAEKSHQLRY PSVLFLIGLC 120 ILCVWIHNDF ALNRQMRGEE LQGLSIEELQ QLEKSLESGL SRVMEKKGQK IMREINDLER 180 KGMQLMEENE RLKLQICNGR KQIASDSEIV FCEDGQSSES VTNVCASNGT PHDYESSDTS 240 LKLGLPYSG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 4e-92 | MIKC_MADS family protein |