PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021274398.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 318aa    MW: 35814.8 Da    PI: 6.4317
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021274398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.41.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lv+++++ G g+W++ ++  g++R++k+c++rw +yl
   XP_021274398.1 14 KGPWTPEEDQKLVKYIQENGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding44.43.8e-1467112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ +++++  lG++ W++Ia+++    t++++k++w+++l
   XP_021274398.1  67 RGKFSQEEEQTILNLHSILGNK-WSAIASHLX-XXTDNEIKNFWNTHL 112
                      89********************.*********.9***********996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MGRSPCCDES GLKKGPWTPE EDQKLVKYIQ ENGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQTILN LHSILGNKWS AIASHLXXXT DNEIKNFWNT HLKKKLIQMG  120
IDPMTHRPRT DIFSSLPHLI ALANLKELMD HHPWEEHAVR LQAEAVQMAK LQCLQYLFQT  180
PASISSGSNN INNTFTDMET INLSNSLSPI KDNSVLNSPQ LDIAAASLQG FNDSIPFPRL  240
PDLQIPCEYP TSTNKDMAQA QEYSVLSQGE TKCNSPWLTS SATPSPSVAP SVTETMIDNS  300
VWPDHQLLFE DPLFHEIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-101MYB family protein