PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274308.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 327aa MW: 36150.7 Da PI: 7.9201

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274308.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.8e-13	126	177	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ L++++P + + ++ + a+i A++++k+L+ XP_021274308.1 126 QRMTHIAVERNRRRQMNDYLAVLKSMMPAS---YVQRGDQASIIGGAINFVKELE 177 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MALEAVVFQQ DPFSFGSKDF YSSGGSGSGP CSYNFGFQQE EEKAYGTEET LAKSRGVDFS 60 ATWGSSPSLM VQHQPLKEWD SNSSSPDNGF LSCGFSPAEP PAGAMSCRRK RRRTKSVKNK 120 EDIENQRMTH IAVERNRRRQ MNDYLAVLKS MMPASYVQRG DQASIIGGAI NFVKELEQLL 180 QSLEARKRMG KRSDNSTLSS LFSDFFSFPQ YSTGSTSTHR SCAAATSGQS MAEKRSSSVA 240 DVEVTMVESH ANLKILSKRH PKQLLKMVAG LHSLGLYVLH LNVTSVEHMV LYSLSVKVED 300 NCQLTTVNEI AAAVYEMVDR FQEEAAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	113	RKRRR
2	109	114	RKRRRT
3	127	138	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	5e-69	bHLH family protein