PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274219.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 262aa MW: 29275.4 Da PI: 8.8936

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274219.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.3	1.6e-14	70	116	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN f++Lr+l+P a kK++Ka+ L ++++++++L XP_021274219.1 70 KNHSEAERRRRARINAHFDTLRDLVPGA-----KKMDKASLLAEVIRHMREL 116 58***********************9.....9*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence
MDQFSWSSNC YSSGFMVNSG CRGKTRKMSF SSSSSSSSLV LDSERGELVE ATMNLPRKGV 60 AAERNVAALK NHSEAERRRR ARINAHFDTL RDLVPGAKKM DKASLLAEVI RHMRELKKNA 120 EEACKGILIP TDTDEVIVEK QEDELDGKPC LIRASLCCDY KPGLLSDLRQ ALDALHLIIV 180 KAEMATWEGR MKNVFLVASC KERDSKDPAV RISTSTLDQT LRSVLDKFSA SEEFSFRGTL 240 SNKRQRISLF NSSLSSSSKD LW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	1e-28	bHLH family protein