PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273923.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family GATA
Protein Properties Length: 388aa    MW: 42535.1 Da    PI: 5.9388
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273923.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.22.6e-19304338135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+tkTp+WR gp g ktLCnaCG+++++ +l
  XP_021273923.1 304 CSHCGVTKTPQWRAGPMGAKTLCNACGVRFKSGRL 338
                     *******************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    
MLYQTHHHPL FFRFRSFTSV PPPLPSTTPS LLPSSLQEME CVETALKTSF RKEMALKSSP  60
QAFLEDIWLA NGQNGVSSDD FSVDDLFDFT NEEGFFEQQQ QQHEEEEEEE EEGAPISSSS  120
SSPNRQKLSQ EEHLSNDTTT NFDYASLPTS ELAVPADDVA NLEWLSHFVE DSFSEHSTAY  180
PTGTLTENPK LQADILAEPE KPVITTCFKT PVPAKARSKR TRTGGRVWSL VASPSLTESS  240
SSSTSSSSSS SPSSPWLLYP NSGSGSNFEP SEPLSVEKPP AKKHKKRPAT DSTGGSGTQP  300
TRRCSHCGVT KTPQWRAGPM GAKTLCNACG VRFKSGRLLP EYRPACSPTF SSELHSNHHR  360
KVLEMRRQKE TLGQAGPGLA PPIVPTFG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-48GATA family protein