PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273898.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 329aa MW: 37139.1 Da PI: 6.5151

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	153	199	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK +Ka++L A++Y+k+Lq XP_021273898.1 153 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYLKQLQ 199 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MEISSGKWLS ELEMEDSTFL PQYQMMNPMD YSFDDLNFQS FSSESYSSYQ NIDQKISSHN 60 NMNDSCIGAS HQVDDFQRPM KQLKTNSPNS CITENIPPKA SSSPSSHIIS FDNWNSSPAI 120 SQQYYGLDCA VKPKNEASKR VGSLTRTPLH AQDHVIAERK RREKLSQRFI SLSALIPGLK 180 KTDKASVLGD AIKYLKQLQE RVTTLEGQVA KKTMESVIFV KKTQIFADDE TSSSDENFDS 240 HSNKPLPEIE ARVADKDVLI RIHCEKNKGC IPNIINEVEK LHLSVLNTNV LPFGQATQDI 300 TIVVQMEAEF SMTMKDLVKS LRTALLKFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	158	163	ERKRRE
2	159	164	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-64	bHLH family protein