PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273897.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 347aa MW: 39143.3 Da PI: 6.7106

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273897.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.4e-12	171	217	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P + kK +Ka++L A++Y+k+Lq XP_021273897.1 171 DHVIAERKRREKLSQRFISLSALIPGL-----KKTDKASVLGDAIKYLKQLQ 217 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MEDSTFLPQY QMMNPMDYSF DDLNFQSFSS ESYSSYQNID QKISSHNNMN DSCIGASHQV 60 DDFQRPMKQL KTNSPNSCIT ENIPPKASSS PSSHIISFDN WNSSPAISQQ YYGLDCAVKP 120 KNEVGYDGNC IEFPSNLIPQ NAYKDQYCSP KYGQASKRVG SLTRTPLHAQ DHVIAERKRR 180 EKLSQRFISL SALIPGLKKT DKASVLGDAI KYLKQLQERV TTLEGQVAKK TMESVIFVKK 240 TQIFADDETS SSDENFDSHS NKPLPEIEAR VADKDVLIRI HCEKNKGCIP NIINEVEKLH 300 LSVLNTNVLP FGQATQDITI VVQMEAEFSM TMKDLVKSLR TALLKFM

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MEDSTFLPQY QMMNPMDYSF DDLNFQSFSS ESYSSYQNID QKISSHNNMN DSCIGASHQV  60
DDFQRPMKQL KTNSPNSCIT ENIPPKASSS PSSHIISFDN WNSSPAISQQ YYGLDCAVKP  120
KNEVGYDGNC IEFPSNLIPQ NAYKDQYCSP KYGQASKRVG SLTRTPLHAQ DHVIAERKRR  180
EKLSQRFISL SALIPGLKKT DKASVLGDAI KYLKQLQERV TTLEGQVAKK TMESVIFVKK  240
TQIFADDETS SSDENFDSHS NKPLPEIEAR VADKDVLIRI HCEKNKGCIP NIINEVEKLH  300
LSVLNTNVLP FGQATQDITI VVQMEAEFSM TMKDLVKSLR TALLKFM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	176	181	ERKRRE
2	177	182	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-64	bHLH family protein