PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273866.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 389aa    MW: 42118.7 Da    PI: 4.7711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273866.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.6e-16146192455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A++Y+k+Lq
  XP_021273866.1 146 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIDYLKQLQ 192
                     6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    
MGDNINVNMF HYNNNYTATN DNNSNNGNCL SSASDDISNL LHQILVRSSS PSPGMAHLEG  60
PTENPRQMSR SPAPAGGEAK QGMILTVDSC GRGSGGSGLV GVAGEINDTE EYDCESEEGL  120
EALVDEAPSK PAPPRSSSKR SRAAEVHNLS EKRRRSRINE KMKALQNLIP NSNKTDKASM  180
LDEAIDYLKQ LQLQVQMLSM RNGLSLHPMC LSGVLQPIQL PQTRIDFGED NGSLPMNASG  240
TVPANQEPSA QIVFDLPNQC GSSNHASVPN MSNIITSEIS FSLESIQAQF GPFQLLTPTQ  300
DICREDIMPH HQVKSNTSEF GSGATSTVSL PFDTRESDLK ESNSLDASMM GRDQPNSVLE  360
HDLIVAPHLT RQAGRSDSSD NIKIEKPNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-53bHLH family protein