PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273865.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 390aa    MW: 42246.8 Da    PI: 4.7711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.44.1e-16146193455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++    +k  +Ka++L +A++Y+k+Lq
  XP_021273865.1 146 VHNLSEKRRRSRINEKMKALQNLIPNS----NKQTDKASMLDEAIDYLKQLQ 193
                     6*************************9....899*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    
MGDNINVNMF HYNNNYTATN DNNSNNGNCL SSASDDISNL LHQILVRSSS PSPGMAHLEG  60
PTENPRQMSR SPAPAGGEAK QGMILTVDSC GRGSGGSGLV GVAGEINDTE EYDCESEEGL  120
EALVDEAPSK PAPPRSSSKR SRAAEVHNLS EKRRRSRINE KMKALQNLIP NSNKQTDKAS  180
MLDEAIDYLK QLQLQVQMLS MRNGLSLHPM CLSGVLQPIQ LPQTRIDFGE DNGSLPMNAS  240
GTVPANQEPS AQIVFDLPNQ CGSSNHASVP NMSNIITSEI SFSLESIQAQ FGPFQLLTPT  300
QDICREDIMP HHQVKSNTSE FGSGATSTVS LPFDTRESDL KESNSLDASM MGRDQPNSVL  360
EHDLIVAPHL TRQAGRSDSS DNIKIEKPNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-52bHLH family protein