PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273864.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 396aa    MW: 42978.6 Da    PI: 4.8542
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.57.8e-16153199455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A++Y+k+Lq
  XP_021273864.1 153 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIDYLKQLQ 199
                     6*************************7.....5******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    
MGDNINVNMF HYNNNYTATN DNNSNNGNCL SSASDDISNL LHQILVRSSS PSPGMAHLEG  60
PTENPRQMSR SPAPAGGEAK QGMILTVDSC GRGSGGSGLV GVAGEINDTE EYDCESEFES  120
CHKQEGLEAL VDEAPSKPAP PRSSSKRSRA AEVHNLSEKR RRSRINEKMK ALQNLIPNSN  180
KTDKASMLDE AIDYLKQLQL QVQMLSMRNG LSLHPMCLSG VLQPIQLPQT RIDFGEDNGS  240
LPMNASGTVP ANQEPSAQIV FDLPNQCGSS NHASVPNMSN IITSEISFSL ESIQAQFGPF  300
QLLTPTQDIC REDIMPHHQV KSNTSEFGSG ATSTVSLPFD TRESDLKESN SLDASMMGRD  360
QPNSVLEHDL IVAPHLTRQA GRSDSSDNIK IEKPNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.18e-51bHLH family protein