PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273844.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family bHLH
Protein Properties Length: 250aa    MW: 28257 Da    PI: 10.5432
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.62.3e-0884133454
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h ++Er RR+ri + ++ Lr++lP++     + ++Ka++L ++++ +++L
  XP_021273844.1  84 RHRIAERHRRKRICQQYDILRSILPNL-IKFMQQMDKASVLGETIRQVREL 133
                     599***********************7.367788**********9988877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MFDTSILIYE EQFLLEANLR SSMVRLKQLE QDIQQPVGGY YSSALCSRPN SLSQQVIPTI  60
DILLKCLPRK TKSKAETNIA NAVRHRIAER HRRKRICQQY DILRSILPNL IKFMQQMDKA  120
SVLGETIRQV RELKKRVKET KAVCRGSLEG VLPGESDNLS LGYCENDGSL LKATFSCDDR  180
AELISDLTRA VRTVNGRVVR AEMVFLGGRN KSVLWVKGLS GNEGIGMLKR ALKMAVDRPK  240
IKNGKPRFAH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.13e-27bHLH family protein