PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021273795.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 791aa MW: 90475.3 Da PI: 7.0246

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021273795.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	100.5	1.7e-31	88	179	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGFs+r+s+s++s+r+g i++r+fvC keg+r+ ++k+ +++ +r+r+ tr+gCka+l vk++++gkw+v+ ++ eHnHel+p XP_021273795.1 88 FYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNLNEKRtkDREIKRPRTITRVGCKASLSVKMQDSGKWVVSGFVREHNHELVP 179 9*************************************998888545677889*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 791 aa Download sequence
MDPEVLEFDI GLGGGGSSAR DGDDDANIGL DVDEDMADSP APSILASNSN GGGFGSGGSE 60 IYVPEGDLLD LEPYEGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRR DGAIIQRQFV 120 CAKEGFRNLN EKRTKDREIK RPRTITRVGC KASLSVKMQD SGKWVVSGFV REHNHELVPP 180 DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN 240 NRQRSLEGDI QLLLDYLRQM QAENPNFFYA VQGDEDQALM SNVFWADPKS RMNYTFFGDT 300 VTFDTTYRSN RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFIWLFKT WLMAMSGRPP 360 VSITTDHDAV IRSAVMQVFP ETRHRFCKWH IFKKCQEKLS QVFLKHPTFE ADFHKCVNLP 420 ESTEEFESCW LSLVDRYELR DHEWLQIIYN DRRQWVPVYL RDTFFAEMSI TQRSDSMNSY 480 FDGFVNASTN LNQFFKLYEK ALESRNEKEV KADYDTMNTS PALKTPSPME KQASELYTRK 540 LFARFQEELV GTLTFMASKS DDDGDIITYQ VAKFGEDHKT YYVKFNVLEM KATCSCQMFE 600 FSGLLCRHVL AVFRVTNVLT LPSHYILKRW TRNAKSSVIL EERASDVYTN YLESHTVRYN 660 TLRHEAFKFV EEGSKSLDTY NVAIGALQEA AKRVALAAKN EGRTMMVNGR VRGNSARDRA 720 NTTNHRVPSQ PLSEDDMDKK IRELANELEF ASRKCEVYRA NLLSVLKDIE DHKLQLSIKV 780 QNIKISMKDG L

Sequence ? help Back to Top

Protein Sequence Length: 791 aa Download sequence

MDPEVLEFDI GLGGGGSSAR DGDDDANIGL DVDEDMADSP APSILASNSN GGGFGSGGSE  60
IYVPEGDLLD LEPYEGMEFE SEEAAKAFYN SYARRVGFST RVSSSRRSRR DGAIIQRQFV  120
CAKEGFRNLN EKRTKDREIK RPRTITRVGC KASLSVKMQD SGKWVVSGFV REHNHELVPP  180
DQVHCLRSHR QISGPAKTLI DTLQAAGMGP RRIMSALIKE YGGISKVGFT EVDCRNYMRN  240
NRQRSLEGDI QLLLDYLRQM QAENPNFFYA VQGDEDQALM SNVFWADPKS RMNYTFFGDT  300
VTFDTTYRSN RYRLPFAPFT GVNHHGQPVL FGCAFLINES EASFIWLFKT WLMAMSGRPP  360
VSITTDHDAV IRSAVMQVFP ETRHRFCKWH IFKKCQEKLS QVFLKHPTFE ADFHKCVNLP  420
ESTEEFESCW LSLVDRYELR DHEWLQIIYN DRRQWVPVYL RDTFFAEMSI TQRSDSMNSY  480
FDGFVNASTN LNQFFKLYEK ALESRNEKEV KADYDTMNTS PALKTPSPME KQASELYTRK  540
LFARFQEELV GTLTFMASKS DDDGDIITYQ VAKFGEDHKT YYVKFNVLEM KATCSCQMFE  600
FSGLLCRHVL AVFRVTNVLT LPSHYILKRW TRNAKSSVIL EERASDVYTN YLESHTVRYN  660
TLRHEAFKFV EEGSKSLDTY NVAIGALQEA AKRVALAAKN EGRTMMVNGR VRGNSARDRA  720
NTTNHRVPSQ PLSEDDMDKK IRELANELEF ASRKCEVYRA NLLSVLKDIE DHKLQLSIKV  780
QNIKISMKDG L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein