PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273713.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family NAC
Protein Properties Length: 340aa    MW: 39240.7 Da    PI: 4.7253
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.15.6e-5691381129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv +yL+kkv+++k++l +vi+++d+y++ePwdL++     ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v
  XP_021273713.1   9 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIRDIDLYRIEPWDLQErcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAV 102
                     69****************************.9***************953432233667************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ k++l+g++ktLvfykgrap+g+ktdW+mheyrle
  XP_021273713.1 103 YD-KSKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 138
                     **.999*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MMESMESCVP PGFRFHPTDE ELVGYYLRKK VASQKIDLDV IRDIDLYRIE PWDLQERCRI  60
GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKSKLIG MRKTLVFYKG  120
RAPNGQKTDW IMHEYRLESD ENGPPQEEGW VVCRAFKKRT SGNGQSKSIE GWDSSYFYDE  180
PSGVSSVVDP IDYISRQPQS FLPQSFLCKQ ETEADNLNFI HSDQFVQLPQ LESPSLPLIK  240
RPSSISLISE NTSYEEEEQN RMCNTTNKVT DWRALDKFVA SQLSQEDRYD GEGVPSFEAN  300
NNSDMALLLL QSSGREEGNK LNEFLNSSSD CDIGICIFDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-159NAC family protein