PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273569.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family C3H
Protein Properties Length: 395aa    MW: 43994.2 Da    PI: 7.7609
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273569.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-067292526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C++++  G+C +Gd+C + H+
  XP_021273569.1 72 VCKYWMS-GYCARGDKCWYLHS 92
                    7******.*********99996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MGIRRAARRY DDDSVERLSV RHKGEAVNIN DYHRNAKPYH ATSEDLLGKS SSHRPKNSCV  60
STIKAREKEN KVCKYWMSGY CARGDKCWYL HSWYCGDGFT MLAKLEGHKK AVHGIALPLE  120
SEKLYSGSSD GTVRTWDCHS GKCVHLSNLG DEVGSLISEG PWVFIGMKGV VKLWNIQTAD  180
ELSLKGPVGQ VYSMVVANTM LFAGAQNGVI FAWKGSSEAN PFQLVASMEA HSGAVLCLTV  240
REKKLYSGSV DHTIRVWDMD TLQCIKTLNG HEDAVMSLLY CNGCLFSCSL DCTIKVWFAT  300
EGENWEVIYT HKEENGVLAL CGMNDAETKP VLFCSCNDNT VRLYDLPSFT ERGRLYSKQE  360
VRVIQRGPFP LFFTGDGNGL LTVWKWLQKP GGGAL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-138C3H family protein