PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021273527.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MYB
Protein Properties Length: 268aa    MW: 30565.6 Da    PI: 4.6981
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021273527.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ +Ed++l ++++++G g W+t +++ g++R++k+c++rw +yl
   XP_021273527.1 14 KGAWSVQEDKILTNYIELHGEGKWNTLPQKAGLNRCGKSCRLRWMNYL 61
                     79********************************************97 PP
2Myb_DNA-binding50.93.6e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++
   XP_021273527.1  67 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSV 111
                      7899******************.*********.***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MGRKPCRLKE GVNKGAWSVQ EDKILTNYIE LHGEGKWNTL PQKAGLNRCG KSCRLRWMNY  60
LRPGIKRGNI SPDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNS VLSKKLNGDA  120
SKPSNMQCEC EGEESVEKYR SGSTPNVIAP KARRCTRTLI SLVKGNHLSN NPCLAPPTPA  180
DDELMLESQK DEVQMPNVED EALIDSELYM PNTLDYLDFS QTRIEDMFEN GNMLESELAP  240
MLEMELDNLT SLLGLEDEWR ELDVENDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-63MYB family protein