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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN23648.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 216aa MW: 24521.3 Da PI: 8.4802 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.9 | 1.7e-20 | 13 | 55 | 5 | 47 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 s q t+ kRr g++KKA ELS+LCdaevavi+fsstg++ PIN23648.1 13 RGSSSQSTYVKRRLGLFKKARELSTLCDAEVAVILFSSTGEMN 55 5577899**********************************97 PP | |||||||
2 | K-box | 46 | 2.2e-16 | 84 | 169 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ ++q ++ + + + + L++ + lG++L+ ++l+eL+ Leq+L+++l i+++K+++lle+i + +++e + +e ++L++++e PIN23648.1 84 KEQPNMQVDVPRQEMQKHDLKKL--QSLGKNLTGMDLQELHALEQKLNEGLLCIKERKEQILLEEIARCRMQEMHAMQEIENLSRQVE 169 45667888888888888888876..99*********************************************************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence |
MGRNKIEIKK MERGSSSQST YVKRRLGLFK KARELSTLCD AEVAVILFSS TGEMNQQCSG 60 DLMALIRKFK NSLGPNNTPA DEPKEQPNMQ VDVPRQEMQK HDLKKLQSLG KNLTGMDLQE 120 LHALEQKLNE GLLCIKERKE QILLEEIARC RMQEMHAMQE IENLSRQVEG FRSFFKSAYP 180 MPVPVSYPPR MTSNVEPTEK DSNTTLCLGL PFSGGQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13790.1 | 3e-41 | MIKC_MADS family protein |