PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN23417.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27666.3 Da    PI: 9.4345
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN23417.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF946.9e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s
  PIN23417.1  9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIIMISSTQKLHEYIS 59
                79***********************************************86 PP

2K-box91.31.8e-3071169199
       K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 yqk+ g++l+++ +e++q++l+kLk+ ++nL+re+R+++Ge+L++L + ++ +L +++++sl+ iR++K++++ +qie+++kk ++++e++++L  +++
  PIN23417.1  71 YQKAVGVDLWSSYYEKMQEHLKKLKEVNRNLRREIRQRMGESLNDLGYDQMVNLIEDMDNSLRLIRDRKYKVIGNQIETSKKKLRNVEEIHRNLVLEFD 169
                 799999****************************************************************************************87765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIIMISS TQKLHEYISP  60
STTTKHVFDQ YQKAVGVDLW SSYYEKMQEH LKKLKEVNRN LRREIRQRMG ESLNDLGYDQ  120
MVNLIEDMDN SLRLIRDRKY KVIGNQIETS KKKLRNVEEI HRNLVLEFDA RQEDPHYGLV  180
ENEGDYNSVL GFPNGGPCII ALSLPPNHHH HHHHHHNHNH PALHSGAGSD PTTFALLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.19e-94MIKC_MADS family protein