PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN21348.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 277aa    MW: 31566.8 Da    PI: 9.3787
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN21348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.33.2e-312574150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  PIN21348.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 74
                79***********************************************8 PP

2K-box101.11.5e-33921893100
       K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 +s+++s++ea+++ +qqe++kL+++i+ +q+++R++lGe+++ Lslk+L+++e ++ek++++iRskKnell+++ie +qk+e el+++n+ Lr+k+ e
  PIN21348.1  92 SSNSVSTSEANTQFYQQEANKLRRQIRDIQNSNRQILGEGVGGLSLKDLKSMEGKVEKAISRIRSKKNELLFAEIELMQKRELELHNANMFLRAKITE 189
                 45556699***************************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MAFPNQESES SNSLRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSTRGRL YEYANNSVRA TIEKYKKASA DSSNSVSTSE ANTQFYQQEA NKLRRQIRDI  120
QNSNRQILGE GVGGLSLKDL KSMEGKVEKA ISRIRSKKNE LLFAEIELMQ KRELELHNAN  180
MFLRAKITES ERAQEQMNLM PAGTEYHQPM TSSQSYDVHN FLPMTLMEPN HHYSCHDQTP  240
LQLVYVDVVT MGKAKAPGYN QEVSVMARNL GDEYVVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-107MIKC_MADS family protein