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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN17677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24232.8 Da PI: 9.7798 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 8.1e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl+ yss PIN17677.1 9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFHYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 47.8 | 6.2e-17 | 88 | 165 | 19 | 96 |
K-box 19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 +++a L k++ +L +++l+G+dL+ L + eL++Le+ +e++l+++ ++Kne +l++i++l+ ke +l een +L++ PIN17677.1 88 NNHAMLSKQLVELSIGLKQLKGDDLQGLGIDELMKLEKLVESGLSRVGKTKNERFLTKISTLKTKESQLMEENARLKQ 165 678899**********************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence |
MVRQKIEIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLFHYSSS 60 SMMQLIQRHN AERSKLGQQP LNIQPGINNH AMLSKQLVEL SIGLKQLKGD DLQGLGIDEL 120 MKLEKLVESG LSRVGKTKNE RFLTKISTLK TKESQLMEEN ARLKQLAEKV RDARVNDFEQ 180 GNNSAESISN DCHGCCPGED KSGSDTSLKL GLPFSDN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 8e-65 | MIKC_MADS family protein |