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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN17675.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 232aa MW: 26876.7 Da PI: 9.8223 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.2 | 1e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+ELS+LCdaev +iifsstgkly+++s PIN17675.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTGKLYDFAS 59 8***********************************************86 PP | |||||||
2 | K-box | 81 | 2.8e-27 | 82 | 171 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ + +q e+a+L+++++ Lq+++++l+Ge+L Ls ++Lq+Le+qLe+slk +R kK+++l+++ieel +k + +++en +L+kk++ PIN17675.1 82 PTSEIKFWQSEAARLRQQLQYLQESHKQLMGEQLYGLSTEDLQNLENQLERSLKGVRMKKQQILTDEIEELNRKGNLINQENIELNKKIN 171 567899*********************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TGKLYDFASS 60 SMKSVIERYN KMKEEHYHLL NPTSEIKFWQ SEAARLRQQL QYLQESHKQL MGEQLYGLST 120 EDLQNLENQL ERSLKGVRMK KQQILTDEIE ELNRKGNLIN QENIELNKKI NHFQKENAEL 180 HKKVYGPGGI SEANRVPHIT RVINECDMHI HTNLELCQSQ NQKKQAAQNV MG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 2e-90 | MIKC_MADS family protein |