![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIN16332.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 379aa MW: 43085.1 Da PI: 9.2114 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.3 | 1.4e-11 | 66 | 122 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g PIN16332.1 66 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqKKKGKQ-GAYDDEEAAARAYDLAALKYWG 122 789******************88887784446666.99***9**************98 PP | |||||||
2 | AP2 | 52.7 | 1.1e-16 | 165 | 216 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g PIN16332.1 165 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 216 89****************99966...3.6*************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence |
MAMAVIKSEE HLKKSQICMT DGEAPPARAV KRRRREATDS ILGNTQHLQQ QEKSPTSTPT 60 TVKRSSRFRG VSRHRWTGRY EAHLWDKLSW NVTQKKKGKQ GAYDDEEAAA RAYDLAALKY 120 WGTSTFTNFP ISDYEKEIEF MQTITKEEYL ASLRRKSSGF SRGMSKYRGV ARHHQNGRWE 180 ARIGRVFGNK YLYLGTYSTQ EEAARAYDIA AIEYRGINAI TNFDLSNYII WLKPESNDSV 240 LALETKPSIV YQEFQSSGLP TKAFHVNDFS MEGRYVRQNP FSSCKRSSSS TALDLLLSSS 300 VFRELVEKNS ILSEEDSDNE NTKNLQQASS NDEYGNAFYD IPFLLSSNSH GIQLKGQLHF 360 NYDSSNIMES GKIGVAPIC |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 28 | 33 | RAVKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54320.3 | 2e-77 | AP2 family protein |