PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN16095.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28702.8 Da    PI: 8.2151
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN16095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.45.1e-30959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr g+ KKA+E+SvLCdaeva+i+fs++gkl+eys+
  PIN16095.1  9 KRIENKINRQVTFSKRRGGLVKKAHEISVLCDAEVALIVFSHKGKLFEYST 59
                79***********************************************96 PP

2K-box109.34.2e-368717413100
       K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                   ++++ e++kLk++i+ Lqr+qRh++GedL+s+slk+Lq+LeqqL+ +lk+iRs+Kn+ll+++i+elq+ke+++qe+n +L+k+++e
  PIN16095.1  87 PPANWNLEYSKLKARIDLLQRNQRHYMGEDLDSMSLKDLQNLEQQLDIALKSIRSRKNQLLYDSISELQQKERAIQEQNSMLTKQIKE 174
                 5679*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGKVELKR IENKINRQVT FSKRRGGLVK KAHEISVLCD AEVALIVFSH KGKLFEYSTD  60
SCMDKILEKY ERYSFAERQL IATEPQPPAN WNLEYSKLKA RIDLLQRNQR HYMGEDLDSM  120
SLKDLQNLEQ QLDIALKSIR SRKNQLLYDS ISELQQKERA IQEQNSMLTK QIKEKEQEMV  180
HQPQWEHQNH GHNTPPPPPP PFLMAPQLPC LNIGGGYQGE AMEGRRNNEL DLTLDSLYSC  240
HLGCFAAR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-115MIKC_MADS family protein