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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN15971.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | AP2 | ||||||||
Protein Properties | Length: 346aa MW: 39137.4 Da PI: 6.5185 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.3 | 3.4e-12 | 44 | 100 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa a++ a++k++g PIN15971.1 44 SIYRGVTRHRWTGRYEAHLWDkNCWNEaQNKKGRQGAYDDEEAAAHAYDLAALKYWG 100 57*******************99999999988888********************98 PP | |||||||
2 | AP2 | 52.3 | 1.4e-16 | 143 | 194 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PIN15971.1 143 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAIAYDMAAIEYRG 194 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence |
MAKLSQQNSK NYPNVNANPV NNPGMKAKRT RKTIPRDSPP QRSSIYRGVT RHRWTGRYEA 60 HLWDKNCWNE AQNKKGRQGA YDDEEAAAHA YDLAALKYWG QDTILNFPLS TYEKELTEME 120 GQSREEYIGS LRRKSSGFSR GVSKYRGVAR HHHNGRWEAR IGRVFGNKYL YLGTYATQEE 180 AAIAYDMAAI EYRGLNAVTN FDLSRYIKWL RPNSNNPNKP NDVDTNLDPS PNHDSGSSAS 240 LHQLEPPSAS LSQPRPATAT SALGLLLQSS KFKEMMEMTL AAECPSTPQE SDPPQSSIPE 300 DIKTCFESND FCAYNDQGDD IFEQLNSYME PMVQFDSMLN GEDLVL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-105 | AP2 family protein |