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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN15385.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 328aa MW: 37442.6 Da PI: 5.7589 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.1 | 9.5e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s PIN15385.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSIFS 58 68********************************************8876 PP | |||||||
2 | K-box | 19.5 | 4.1e-08 | 113 | 175 | 9 | 71 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 + +++ e+ qqe+ k k ++e +++++R + G+ + l e + eq Le+ lk++R +K+ PIN15385.1 113 TIDSQVEEIQQEMLKYKCQLEDMEKKLRIYEGDPSQITMLCEAEYREQVLEENLKQVRMRKYV 175 568899***************************9999999999999***************85 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSIFSGN 60 RSIEEIMARY VNLPEHERGR LQNQEYLQRA LGKLKSEAGR SYQAATSSPP ASTIDSQVEE 120 IQQEMLKYKC QLEDMEKKLR IYEGDPSQIT MLCEAEYREQ VLEENLKQVR MRKYVLQDLY 180 NSPAAQTSQV MSMPSETTDM NVLGARNADN VLDWLPQRDP QTQILNFLNS NGLLPVRDQP 240 QRMDNMLPPS LTLVHAPSVH VFNHLSPSRS IEDDAQRPEF GQVIDVNLSP WAELYPTGND 300 PFPAAQPRER ALLELFLSQL SPVNQDHI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 4e-54 | MIKC_MADS family protein |