PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN15385.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 328aa    MW: 37442.6 Da    PI: 5.7589
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN15385.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.19.5e-28958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l  +s
  PIN15385.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSIFS 58
                68********************************************8876 PP

2K-box19.54.1e-08113175971
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 
                 + +++ e+ qqe+ k k ++e +++++R + G+  +   l e +  eq Le+ lk++R +K+ 
  PIN15385.1 113 TIDSQVEEIQQEMLKYKCQLEDMEKKLRIYEGDPSQITMLCEAEYREQVLEENLKQVRMRKYV 175
                 568899***************************9999999999999***************85 PP

Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSIFSGN  60
RSIEEIMARY VNLPEHERGR LQNQEYLQRA LGKLKSEAGR SYQAATSSPP ASTIDSQVEE  120
IQQEMLKYKC QLEDMEKKLR IYEGDPSQIT MLCEAEYREQ VLEENLKQVR MRKYVLQDLY  180
NSPAAQTSQV MSMPSETTDM NVLGARNADN VLDWLPQRDP QTQILNFLNS NGLLPVRDQP  240
QRMDNMLPPS LTLVHAPSVH VFNHLSPSRS IEDDAQRPEF GQVIDVNLSP WAELYPTGND  300
PFPAAQPRER ALLELFLSQL SPVNQDHI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.14e-54MIKC_MADS family protein