PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN12664.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 263aa    MW: 30525.4 Da    PI: 7.2672
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN12664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52.1e-29959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++
  PIN12664.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59
                79***********************************************86 PP

2K-box1041.9e-34791745100
       K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 + ++ + +  +s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+ slk+iR++Kn+++ e+i+elqkk k+lqe+n+ L kk++e
  PIN12664.1  79 QLREPNVESPASWTLEHAKLKARMEVLQRNQRHYAGEDLDSLSMKELQNLEHQLDVSLKHIRTRKNQVMNESISELQKKDKALQEQNNLLAKKIKE 174
                 555555566789*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD  60
SCMERILERY ERYSYAERQL REPNVESPAS WTLEHAKLKA RMEVLQRNQR HYAGEDLDSL  120
SMKELQNLEH QLDVSLKHIR TRKNQVMNES ISELQKKDKA LQEQNNLLAK KIKEREKELA  180
QRTAWEQQNH DLNSTCFNLS QQNHDLNSSC FDLPHDPLAC YNVSEIYVAQ GENNGEIEEN  240
PLQNQSTNAA IPPWMLQPPH VDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-100MIKC_MADS family protein