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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN12664.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 263aa MW: 30525.4 Da PI: 7.2672 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.5 | 2.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCda+v +i+fs++gkl+ey++ PIN12664.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDADVGLIVFSTKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 104 | 1.9e-34 | 79 | 174 | 5 | 100 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + ++ + + +s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+ slk+iR++Kn+++ e+i+elqkk k+lqe+n+ L kk++e PIN12664.1 79 QLREPNVESPASWTLEHAKLKARMEVLQRNQRHYAGEDLDSLSMKELQNLEHQLDVSLKHIRTRKNQVMNESISELQKKDKALQEQNNLLAKKIKE 174 555555566789*********************************************************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence |
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD ADVGLIVFST KGKLFEYATD 60 SCMERILERY ERYSYAERQL REPNVESPAS WTLEHAKLKA RMEVLQRNQR HYAGEDLDSL 120 SMKELQNLEH QLDVSLKHIR TRKNQVMNES ISELQKKDKA LQEQNNLLAK KIKEREKELA 180 QRTAWEQQNH DLNSTCFNLS QQNHDLNSSC FDLPHDPLAC YNVSEIYVAQ GENNGEIEEN 240 PLQNQSTNAA IPPWMLQPPH VDG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 1e-100 | MIKC_MADS family protein |