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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN10460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 27513.1 Da PI: 8.9734 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94 | 6.8e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sst+kl+ey+s PIN10460.1 9 KRIENQTNRQVTYSKRRNGLFKKAHELTVLCDAKVSIIMISSTQKLHEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 91 | 2.1e-30 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yqk+ g++l+++ +e++q++l++Lk+ ++nL+re+R+++Ge+L++L + ++ +L +++++sl+ iR++K++++ +qie+++kk ++++e++++L +++ PIN10460.1 71 YQKAVGVDLWSSYYEKMQEHLNRLKEVNRNLRREIRQRMGESLNDLGYDQMVNLIEDMDNSLRLIRDRKYKVIGNQIETSKKKLRNVEEIHRNLVLEFD 169 799999****************************************************************************************87765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MARGNIQIKR IENQTNRQVT YSKRRNGLFK KAHELTVLCD AKVSIIMISS TQKLHEYISP 60 STTTKQVFDQ YQKAVGVDLW SSYYEKMQEH LNRLKEVNRN LRREIRQRMG ESLNDLGYDQ 120 MVNLIEDMDN SLRLIRDRKY KVIGNQIETS KKKLRNVEEI HRNLVLEFDA RQEDPHYGLV 180 ENEGDYNSVL GFPNGGPCII ALSLPPNHHH HHHQHNHNHP ALHSGGGSDL TTFALLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-93 | MIKC_MADS family protein |