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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN08339.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 28160.8 Da PI: 9.4642 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.6 | 2.6e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ PIN08339.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 98.9 | 7.1e-33 | 93 | 189 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s++ s++ea+++ +qqe++kL+++i+++q+++R++lGe+++++ l+eL+++e ++ek++++iRskKnell+++ie +qk+e el+++n++Lr+k++e PIN08339.1 93 SNSMSTSEANTQFYQQEASKLRRQIREIQTSNRQILGEGVSNMPLRELRNMEGKVEKAISRIRSKKNELLFAEIELMQKRELELHNANMYLRAKIAE 189 4455599***************************************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MEFPSQESES SNSLRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LIVFSTRGRL YEYANNSVKA TIDRYKKATA DSSNSMSTSE ANTQFYQQEA SKLRRQIREI 120 QTSNRQILGE GVSNMPLREL RNMEGKVEKA ISRIRSKKNE LLFAEIELMQ KRELELHNAN 180 MYLRAKIAEN ERAQEQMNLM PGSSEYQQPM TSQSYDVRNF LPLNFVEPNE HYSCQDQTPL 240 QLV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58780.1 | 1e-114 | MIKC_MADS family protein |