PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN08339.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28160.8 Da    PI: 9.4642
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN08339.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.6e-312574150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  PIN08339.1 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 74
                79***********************************************8 PP

2K-box98.97.1e-33931894100
       K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 s++ s++ea+++ +qqe++kL+++i+++q+++R++lGe+++++ l+eL+++e ++ek++++iRskKnell+++ie +qk+e el+++n++Lr+k++e
  PIN08339.1  93 SNSMSTSEANTQFYQQEASKLRRQIREIQTSNRQILGEGVSNMPLRELRNMEGKVEKAISRIRSKKNELLFAEIELMQKRELELHNANMYLRAKIAE 189
                 4455599***************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MEFPSQESES SNSLRKNGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA  60
LIVFSTRGRL YEYANNSVKA TIDRYKKATA DSSNSMSTSE ANTQFYQQEA SKLRRQIREI  120
QTSNRQILGE GVSNMPLREL RNMEGKVEKA ISRIRSKKNE LLFAEIELMQ KRELELHNAN  180
MYLRAKIAEN ERAQEQMNLM PGSSEYQQPM TSQSYDVRNF LPLNFVEPNE HYSCQDQTPL  240
QLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-114MIKC_MADS family protein