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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN06514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 221aa MW: 24996.7 Da PI: 8.488 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.7 | 5.5e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKA+ELS+LCdae+a+i+fs tgkl++yss PIN06514.1 9 KKIDNLTARQVTFSKRRRGLFKKAQELSTLCDAEIALIVFSATGKLFDYSS 59 68***********************************************96 PP | |||||||
2 | K-box | 53.5 | 1e-18 | 82 | 171 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + +++ + ++ + ke+ L +e+++l+Ge+L+ L +++L++Le+ +e++l+++ ++Kne l+++i++l+ ++ el een+ L+++ e PIN06514.1 82 QPLHTQMGSSNHGMISKELTDLTTELKQLMGEELQGLGMNDLMKLEKMVETGLSRVGKTKNEKLFTEISKLKTRQAELIEENEWLKQQAE 171 5556777778888899**********************************************************************9976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MVRQKIQIKK IDNLTARQVT FSKRRRGLFK KAQELSTLCD AEIALIVFSA TGKLFDYSSS 60 SMMQLIQRHN MQSEKSNKFG QQPLHTQMGS SNHGMISKEL TDLTTELKQL MGEELQGLGM 120 NDLMKLEKMV ETGLSRVGKT KNEKLFTEIS KLKTRQAELI EENEWLKQQA EKFDCTRNAM 180 EQGSSVESMT NSLGLVHCPE EEDRAVSDTS LKLGLPFSNG N |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-70 | MIKC_MADS family protein |