PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN06288.1
Organism
Handroanthus impetiginosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24903.6 Da    PI: 10.2801
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN06288.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien snrqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  PIN06288.1  9 KRIENASNRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQRGRLYEFSS 59
                79***********************************************96 PP
2K-box75.91.1e-2581170998
       K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  +e+++++lq+e+a + ++ie L+++ R+llG +L+++s++eLq + +qL++slk+iRs+K +l++e+i +lq ke++l een++Lr+k+
  PIN06288.1  81 ETEQHMQHLQHEAALMSRKIELLENSRRKLLGYNLGTCSMEELQDIDKQLQRSLKNIRSRKAQLFKEEIGKLQTKENSLFEENERLREKI 170
                 6899************************************************************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MVRGKVEMKR IENASNRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ RGRLYEFSSS  60
NMQRSIQKYL ELTKGRHASM ETEQHMQHLQ HEAALMSRKI ELLENSRRKL LGYNLGTCSM  120
EELQDIDKQL QRSLKNIRSR KAQLFKEEIG KLQTKENSLF EENERLREKI GLKQRHAQEN  180
VGQQEIGCYS RSTQCSEVVT ELFIGPPTRR RIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.16e-78MIKC_MADS family protein