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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN05943.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 213aa MW: 24771.7 Da PI: 9.4309 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.2 | 3.4e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +rqvtfskRrng+lKKA+ELSvLCdaev++iifs++gklye+ss PIN05943.1 9 KRIENALRRQVTFSKRRNGLLKKAYELSVLCDAEVSLIIFSQKGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 73.9 | 4.4e-25 | 79 | 170 | 8 | 98 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 s +e+++++l++e+a + k+ie Lq+ R+llG +L+++s++eLq++ +qLe+slk+iRs+K +l+ e ie+lq kek l een++L +++ PIN05943.1 79 SiEDEQHMQHLKHEAALMSKKIELLQNFYRKLLGHNLGTCSMEELQSIGEQLERSLKNIRSRKAQLFQEDIEKLQTKEKFLLEENERLCEEI 170 337899*********************************************************************************98776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MVRGKVEMKR IENALRRQVT FSKRRNGLLK KAYELSVLCD AEVSLIIFSQ KGKLYEFSSS 60 NMQISIQKYL KLTKERHTSI EDEQHMQHLK HEAALMSKKI ELLQNFYRKL LGHNLGTCSM 120 EELQSIGEQL ERSLKNIRSR KAQLFQEDIE KLQTKEKFLL EENERLCEEI GLKQRHAQEK 180 VGQQEIGSCS RSTECSEVVT ELFIGPPTTK KIA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 3e-77 | MIKC_MADS family protein |