PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN05943.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24771.7 Da    PI: 9.4309
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN05943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.23.4e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien  +rqvtfskRrng+lKKA+ELSvLCdaev++iifs++gklye+ss
  PIN05943.1  9 KRIENALRRQVTFSKRRNGLLKKAYELSVLCDAEVSLIIFSQKGKLYEFSS 59
                79***********************************************96 PP

2K-box73.94.4e-2579170898
       K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 s  +e+++++l++e+a + k+ie Lq+  R+llG +L+++s++eLq++ +qLe+slk+iRs+K +l+ e ie+lq kek l een++L +++
  PIN05943.1  79 SiEDEQHMQHLKHEAALMSKKIELLQNFYRKLLGHNLGTCSMEELQSIGEQLERSLKNIRSRKAQLFQEDIEKLQTKEKFLLEENERLCEEI 170
                 337899*********************************************************************************98776 PP

Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    
MVRGKVEMKR IENALRRQVT FSKRRNGLLK KAYELSVLCD AEVSLIIFSQ KGKLYEFSSS  60
NMQISIQKYL KLTKERHTSI EDEQHMQHLK HEAALMSKKI ELLQNFYRKL LGHNLGTCSM  120
EELQSIGEQL ERSLKNIRSR KAQLFQEDIE KLQTKEKFLL EENERLCEEI GLKQRHAQEK  180
VGQQEIGSCS RSTECSEVVT ELFIGPPTTK KIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.13e-77MIKC_MADS family protein