PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN05942.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 135aa    MW: 15318.8 Da    PI: 9.0059
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN05942.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.2e-26954146
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46
                +rien s rqv fskRrng+lKKA+E+SvLCdaeva+iifs++g+l
  PIN05942.1  9 ERIENASSRQVAFSKRRNGLLKKAYEVSVLCDAEVALIIFSEKGRL 54
                69******************************************98 PP

2K-box42.52.8e-15551043584
       K-box  35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                 q +llG +L ++s++eLq++ +qLe+sl+++Rs K +l++e+ie+lq+k 
  PIN05942.1  55 QLQLLGHNLFTCSMEELQNIGEQLERSLENVRSIKVQLFKEEIEKLQRKL 104
                 679*********************************************96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    
MVRGKVEMER IENASSRQVA FSKRRNGLLK KAYEVSVLCD AEVALIIFSE KGRLQLQLLG  60
HNLFTCSMEE LQNIGEQLER SLENVRSIKV QLFKEEIEKL QRKLTAGIGS CSRSTECSEV  120
VTELFIGSPT RRKLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.38e-37MIKC_MADS family protein