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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN02379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 27846.7 Da PI: 9.2444 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.4 | 7.7e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++ rqvtfskRr+g++KK +ELSvLCda++ +i+fss+gkl eys+ PIN02379.1 9 KRIENNTSRQVTFSKRRAGLMKKTHELSVLCDAQIGLIVFSSKGKLTEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 55.4 | 2.6e-19 | 92 | 175 | 14 | 97 |
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + + ++el+++k+e+ nLq ++ +++G+dL++ +++eL +LeqqLe+s+ k+R++K +ll+eq+e+l++ +++ e +++ +++ PIN02379.1 92 NDQVYKELTRMKNETLNLQLSLQRYKGDDLSTVQFEELTELEQQLEQSVHKVRARKFQLLHEQLENLKRTIQRQAEFEQQQQQQ 175 457899**************************************************************9999888877766665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence |
MGRGKIEVKR IENNTSRQVT FSKRRAGLMK KTHELSVLCD AQIGLIVFSS KGKLTEYSTP 60 PLSMKQIIDR YVKTKGIPFP DRDNRAGAIA YNDQVYKELT RMKNETLNLQ LSLQRYKGDD 120 LSTVQFEELT ELEQQLEQSV HKVRARKFQL LHEQLENLKR TIQRQAEFEQ QQQQQAMTEL 180 KLVEQQPLLN QFPFFGEDLQ LGTTLPLHPH SYHLQPTHPN LQDSGLESGH NIVYSLGKDS 240 T |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23260.2 | 1e-46 | MIKC_MADS family protein |