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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 212aa MW: 24455.2 Da PI: 10.0349 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.3 | 8.6e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien s rqvtfskR+ng+ KKA ELSvLCdaeva+iifs++g+l+e+ss PIN01002.1 9 KRIENASSRQVTFSKRKNGLQKKACELSVLCDAEVALIIFSQKGTLFEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 72.3 | 1.5e-24 | 81 | 169 | 9 | 97 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + e+++++l++e+a + ++ie L+++ R+llG +L+++s++eLq + +qL++slk+iRs+K++l++e i++lq kek l eenk+Lr+k PIN01002.1 81 AVEQHMQHLKHEAAMMSRKIELLENSRRKLLGHNLGTCSMEELQDIDKQLQRSLKNIRSRKDQLFKEDIQKLQTKEKFLLEENKRLREK 169 67999**********************************************************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MVRGKVEMKR IENASSRQVT FSKRKNGLQK KACELSVLCD AEVALIIFSQ KGTLFEFSSS 60 DMQKSIQKYL ELTKDRHTSI AVEQHMQHLK HEAAMMSRKI ELLENSRRKL LGHNLGTCSM 120 EELQDIDKQL QRSLKNIRSR KDQLFKEDIQ KLQTKEKFLL EENKRLREKN GPKQRHVLDK 180 EQEEIGSGSL STQCSDVGIE LCIGPPTTRK LS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45660.1 | 5e-76 | MIKC_MADS family protein |