![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIN01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 159aa MW: 18462.3 Da PI: 8.8517 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.4 | 5.9e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss PIN01001.1 9 KRIENASSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 54.7 | 4.4e-19 | 59 | 123 | 34 | 98 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++llG +L+++sl+eLq + +qLe+slk+iRs+K +l++e ie+lq ek l een++L +k PIN01001.1 59 SSKKLLGHNLGTCSLEELQDIDEQLERSLKNIRSRKAQLFKEDIEKLQTEEKILLEENERLCEKA 123 5689*********************************************************9886 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 159 aa Download sequence |
MVRGKVEMKR IENASSRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ KGRLYEFSSS 60 KKLLGHNLGT CSLEELQDID EQLERSLKNI RSRKAQLFKE DIEKLQTEEK ILLEENERLC 120 EKAEIWVVTG KWTGWAVFGL DPQEVLRSVN WKNFAMNPI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62165.3 | 3e-45 | MIKC_MADS family protein |