PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN01001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 159aa    MW: 18462.3 Da    PI: 8.8517
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN01001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.45.9e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krien s rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++g+lye+ss
  PIN01001.1  9 KRIENASSRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSQKGRLYEFSS 59
                79***********************************************96 PP

2K-box54.74.4e-19591233498
       K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + ++llG +L+++sl+eLq + +qLe+slk+iRs+K +l++e ie+lq  ek l een++L +k 
  PIN01001.1  59 SSKKLLGHNLGTCSLEELQDIDEQLERSLKNIRSRKAQLFKEDIEKLQTEEKILLEENERLCEKA 123
                 5689*********************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    
MVRGKVEMKR IENASSRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSQ KGRLYEFSSS  60
KKLLGHNLGT CSLEELQDID EQLERSLKNI RSRKAQLFKE DIEKLQTEEK ILLEENERLC  120
EKAEIWVVTG KWTGWAVFGL DPQEVLRSVN WKNFAMNPI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.33e-45MIKC_MADS family protein