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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIN00412.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28908.9 Da PI: 8.302 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.1 | 8.4e-32 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ PIN00412.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58 79**********************************************95 PP | |||||||
2 | K-box | 105.5 | 6.5e-35 | 77 | 169 | 6 | 98 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + s +e+++++++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l++ R++K+++++eq+eel++ke++l + nk+L+ k+ PIN00412.1 77 QDSISERETQNWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGALTQARQRKTQIMMEQMEELRRKERQLGDMNKQLKIKV 169 4458999**********************************************************************************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGST 60 SMTQILERYQ RCCFNSQDSI SERETQNWYQ EVSKLKAKYE SLQRTQRHLL GEDLGPLSIK 120 ELQNLEKQLE GALTQARQRK TQIMMEQMEE LRRKERQLGD MNKQLKIKVS LEMSSLESEG 180 QGLRAFPCQW NQDTSAGTSS FPLQIPPSNP MEMEPEPVLE IGYHHYNLAE GSSVDRSMAL 240 DSNFFQGWSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 1e-100 | MIKC_MADS family protein |