PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIN00412.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family MIKC_MADS
Protein Properties Length: 250aa    MW: 28908.9 Da    PI: 8.302
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIN00412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.4e-32958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krienk+nrqvtfskRrng+lKKA+ELSvLCdaeva+iifss+gklye+ 
  PIN00412.1  9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFG 58
                79**********************************************95 PP

2K-box105.56.5e-3577169698
       K-box   6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + s +e+++++++qe++kLk+++e+Lqr+qRhllGedL++Ls+keLq+Le+qLe +l++ R++K+++++eq+eel++ke++l + nk+L+ k+
  PIN00412.1  77 QDSISERETQNWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGALTQARQRKTQIMMEQMEELRRKERQLGDMNKQLKIKV 169
                 4458999**********************************************************************************9886 PP

Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFGST  60
SMTQILERYQ RCCFNSQDSI SERETQNWYQ EVSKLKAKYE SLQRTQRHLL GEDLGPLSIK  120
ELQNLEKQLE GALTQARQRK TQIMMEQMEE LRRKERQLGD MNKQLKIKVS LEMSSLESEG  180
QGLRAFPCQW NQDTSAGTSS FPLQIPPSNP MEMEPEPVLE IGYHHYNLAE GSSVDRSMAL  240
DSNFFQGWSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.11e-100MIKC_MADS family protein