![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PIM99666.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 223aa MW: 26023.5 Da PI: 9.293 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.9 | 5.4e-28 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+ rqvtfskRr g+lKKA+E+S+LCdaev +i+fs++gkl+e+s+ PIM99666.1 9 KRIENKISRQVTFSKRRSGLLKKAQEISILCDAEVGLIVFSTKGKLFEFST 59 79***********************************************96 PP | |||||||
2 | K-box | 97.7 | 1.7e-32 | 81 | 171 | 7 | 98 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++ + e++++e+ kL ++ie Lqr++R++ GedL++Lsl+eLq+Leqq++++lk+iR++ n+l+ +i++lqkkek+l+e+n+ L k+l PIM99666.1 81 N-NDCERKENWCHEYPKLTARIELLQRNIRNYAGEDLDPLSLRELQNLEQQIDNALKRIRTRTNQLMNGSISQLQKKEKSLHEQNNLLAKQL 171 3.3445579*******************************************************************************9986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 223 aa Download sequence |
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KAQEISILCD AEVGLIVFST KGKLFEFSTD 60 SSMERIIEKY EEYAYSEKRA NNDCERKENW CHEYPKLTAR IELLQRNIRN YAGEDLDPLS 120 LRELQNLEQQ IDNALKRIRT RTNQLMNGSI SQLQKKEKSL HEQNNLLAKQ LLKENEKQQA 180 EESNKEEEEG LAKDASNFGL PKSPSELHRI PSLTIRYYFS LSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60910.1 | 5e-78 | MIKC_MADS family protein |