PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PIM98500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
Family AP2
Protein Properties Length: 449aa    MW: 49357.7 Da    PI: 6.3255
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PIM98500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.92.1e-17160209155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  PIM98500.1 160 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAFAAARAYDRAAIKFRG 209
                 78*******************......55************************997 PP

2AP2422.3e-13252302155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV+ +k  grW+A+       g    +k+++lg f+++ eAa+a+++a+ k +g
  PIM98500.1 252 SKYRGVTLHK-CGRWEAR---T---GqvlGKKYIYLGLFDSEVEAARAYDKAAIKCNG 302
                 89********.7******...6...445336**********99**********99776 PP

Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MFDLNLSIDC NGEDKLEVNT SEGQSPATSL SSVVNGEAEF SSSNDDACTT RASGGSSGDA  60
TVTFNFNILN GSVSDHPIEK DDANRGLTST KSGLVTRELF PVIRLGELNR GSRSNELPDL  120
PVDQDLLPRG IPQMEVQQKQ QQVQQLQARK SRRGPRSRSS QYRGVTYYRR TGRWESHIWD  180
CGKQVYLGGF DTAFAAARAY DRAAIKFRGV DADINFNLGD YEEDMKLMMN LSKEEFVHIL  240
RRQSTGFSRG SSKYRGVTLH KCGRWEARTG QVLGKKYIYL GLFDSEVEAA RAYDKAAIKC  300
NGNEAVTNFE PSTYSREMIG GEPCNKGGQH DLDLNLGISA SPPMDNGGLG SSKFHPHDVQ  360
NATTFKLDVE KTSIGTSPHQ GLAVKTLENP ILWAGVNPKF VPNYEQERAS EQSTTAAASS  420
GFSSMDISSA FSNPLCLSSY PNTSQYYYS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-83AP2 family protein