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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PIM98500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Bignoniaceae; Crescentiina; Tabebuia alliance; Handroanthus
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Family | AP2 | ||||||||
Protein Properties | Length: 449aa MW: 49357.7 Da PI: 6.3255 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.9 | 2.1e-17 | 160 | 209 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ k++g PIM98500.1 160 SQYRGVTYYRRTGRWESHIWD------CgKQVYLGGFDTAFAAARAYDRAAIKFRG 209 78*******************......55************************997 PP | |||||||
2 | AP2 | 42 | 2.3e-13 | 252 | 302 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ k +g PIM98500.1 252 SKYRGVTLHK-CGRWEAR---T---GqvlGKKYIYLGLFDSEVEAARAYDKAAIKCNG 302 89********.7******...6...445336**********99**********99776 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence |
MFDLNLSIDC NGEDKLEVNT SEGQSPATSL SSVVNGEAEF SSSNDDACTT RASGGSSGDA 60 TVTFNFNILN GSVSDHPIEK DDANRGLTST KSGLVTRELF PVIRLGELNR GSRSNELPDL 120 PVDQDLLPRG IPQMEVQQKQ QQVQQLQARK SRRGPRSRSS QYRGVTYYRR TGRWESHIWD 180 CGKQVYLGGF DTAFAAARAY DRAAIKFRGV DADINFNLGD YEEDMKLMMN LSKEEFVHIL 240 RRQSTGFSRG SSKYRGVTLH KCGRWEARTG QVLGKKYIYL GLFDSEVEAA RAYDKAAIKC 300 NGNEAVTNFE PSTYSREMIG GEPCNKGGQH DLDLNLGISA SPPMDNGGLG SSKFHPHDVQ 360 NATTFKLDVE KTSIGTSPHQ GLAVKTLENP ILWAGVNPKF VPNYEQERAS EQSTTAAASS 420 GFSSMDISSA FSNPLCLSSY PNTSQYYYS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 2e-83 | AP2 family protein |