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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022775800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | AP2 | ||||||||
Protein Properties | Length: 406aa MW: 46075.6 Da PI: 9.3941 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.9 | 3.3e-15 | 67 | 126 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_022775800.1 67 SRFRGVSRHRWTGRFEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAAIKYWG 126 789******************988855556447*************************98 PP | |||||||
2 | AP2 | 49.5 | 1.1e-15 | 169 | 220 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_022775800.1 169 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 220 79****99**********99966...3.6*************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence |
METVTAKSKL SPGRRRLCMA EDDTIETKCI KRRRRDPSTG ALGCNNQQGE QQVQGDQPTA 60 TTVKRSSRFR GVSRHRWTGR FEAHLWDKGS WNPTQRKKGK QVYLGAYDEE ESAARAYDLA 120 AIKYWGTSTF TNFPVSDYEK EIEIMKSVTK EEYLASLRRR SSGFSRGVSR YRGVARHHHN 180 GRWEARIGRV FGNKYLYLGT YSTQEEAAHA YDIAAIEYRG INAVTNFDLS TYIRWLKPGA 240 NHALVSEEVK TTLASQPMTT SNLFPNEQTN DLPLFNSNPF TIEAFDRPKK QDILQKKASV 300 NPRAKSSSPT ALGLLLRSSM FNKLVEQNLN ANYDEIEEND TKGLTEIVDN NGVGEMFYNE 360 IDHVPFMCSS NRDVLAGLES KESELPLYNK TVQSLWNGAL NIPSLR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 14 | 35 | RRRLCMAEDDTIETKCIKRRRR |
2 | 93 | 101 | PTQRKKGKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.1 | 2e-77 | AP2 family protein |