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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_022730846.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio
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Family | AP2 | ||||||||
Protein Properties | Length: 363aa MW: 41150.4 Da PI: 7.6159 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.4 | 1.1e-15 | 52 | 111 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g XP_022730846.1 52 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 111 57*******************999955656446*************************98 PP | |||||||
2 | AP2 | 51.2 | 3.1e-16 | 154 | 205 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_022730846.1 154 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 205 89****99**********99966...3.6*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence |
MAKLSQQNQK NNAQSNSIKN DISNTSTTSN GVTKVKRTRR SVPRDSPPQR SSIYRGVTRH 60 RWTGRYEAHL WDKNCWNESQ NKKGRQVYLG AYDDEEAAAH AYDLAALKYW GQDTILNFPL 120 STYEKELKEM EDQSREEYIG SLRRKSSGFS RGVSKYRGVA RHHHNGRWEA RIGRVFGNKY 180 LYLGTYATQE EAATAYDMAA IEYRGLNAVT NFDLSRYIKW LKPNQTNTEI NPNPNSNIDT 240 ATSTVTPSPS QELNLSFFSN NNNQQLQAAS SFPSETLQTQ SRPVNATSAL GLLLQSSKFK 300 EMMEMTSAAD HCQLTPPVQR SFPEDIQTYF ECQDSSSYGD GDDIIFGELN SFMPPMFQGD 360 LDA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-106 | AP2 family protein |