PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022726716.1

Organism

Durio zibethinus

Taxonomic ID

66656

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Helicteroideae; Durio

Family

AP2

Protein Properties

Length: 397aa MW: 45177.4 Da PI: 9.5541

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022726716.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.2	2.7e-15	69	128	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_022726716.1 69 SRFRGVSRHRWTGRFEAHLWDkSSWNPtqrKKgKQVYLGAYDEEESAARAYDLAAIKYWG 128 789****************777755666447***********************98 PP
2	AP2	48.4	2.3e-15	171	222	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_022726716.1 171 SRFRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 222 789*99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MVTEKSELSR GRRRRLRMAE SDTIETKCTK RRRRDTSTGA LGCNNKQEEQ QQQQLQGDQP 60 TATTVKRSSR FRGVSRHRWT GRFEAHLWDK SSWNPTQRKK GKQVYLGAYD EEESAARAYD 120 LAAIKYWGTS TFTNFPVSDY EKEIEIIKSV TKEEYLPSLR RRSSGFSRGV SRFRGVARHH 180 HNGRWEARIG RVFGNKYLYL GTYSTQEEAA HAYDIAAIEY RGINAVTNFD LSTYIRRLKP 240 RANRALASEE LKTTKTTSSN LFPTDQTNDL PLFSSNPFTV EALDSPKEQD ILLKKAPGSP 300 CAKSSPPTAL SLLLRSSMFN KLVEQNLNAN FDEIEENDTK ELNEIADNNG AGEMFYNEID 360 HVPFMCSSSR GILPGLESEE NNLPLYNKTG QSRGMVP

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MVTEKSELSR GRRRRLRMAE SDTIETKCTK RRRRDTSTGA LGCNNKQEEQ QQQQLQGDQP  60
TATTVKRSSR FRGVSRHRWT GRFEAHLWDK SSWNPTQRKK GKQVYLGAYD EEESAARAYD  120
LAAIKYWGTS TFTNFPVSDY EKEIEIIKSV TKEEYLPSLR RRSSGFSRGV SRFRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA HAYDIAAIEY RGINAVTNFD LSTYIRRLKP  240
RANRALASEE LKTTKTTSSN LFPTDQTNDL PLFSSNPFTV EALDSPKEQD ILLKKAPGSP  300
CAKSSPPTAL SLLLRSSMFN KLVEQNLNAN FDEIEENDTK ELNEIADNNG AGEMFYNEID  360
HVPFMCSSSR GILPGLESEE NNLPLYNKTG QSRGMVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	17	RGRRRRLR
2	12	34	RRRRLRMAESDTIETKCTKRRRR
3	13	35	RRRRLRMAESDTIETKCTKRRRR
4	95	103	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-79	AP2 family protein