PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr20428.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family NF-YC
Protein Properties Length: 160aa    MW: 17582.1 Da    PI: 6.7946
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr20428.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.83.3e-1512103898
      NF-YC   8 kqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt.rtdifdflvdivpr 98 
                ++ e++ ++ n  lP+ r+kki+k+d d+k++ +ea  l++ + +lfi  l+ rs   a e+kr+ +k   + +a   +  + dfl+d  p+
  Dr20428.1  12 EEEEEDREILNPLLPIGRVKKIVKMDRDIKKVNSEALHLITLSTQLFIEFLAERSRTAAVEKKRKVIKVEHLRSAARnHPPTSDFLLDCLPK 103
                456788899999***********************************************************987665156899*****9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    
MAAIEERAEI EEEEEEDREI LNPLLPIGRV KKIVKMDRDI KKVNSEALHL ITLSTQLFIE  60
FLAERSRTAA VEKKRKVIKV EHLRSAARNH PPTSDFLLDC LPKPAQAKPS ASASSRPLPD  120
DAPPPPQPLP PGARRIDDFF SKPSSAGKQG TSEDGAATAC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-32NF-YC family protein