PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr20176.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 321aa MW: 35341.1 Da PI: 9.1669

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr20176.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	50.5	5.4e-16	58	146	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + aLi+a e+ +l+rg+lk+++W++v++++ ++ r+ +qCk++++ l+k+yk +k ++ ++ +s +p+fd+l+ Dr20176.1 58 CWSEGATSALIDAWGERFLDLSRGNLKQKHWQDVADAVssreDYTKTPRTDVQCKNRIDTLKKKYKIEKSKISN-SPAYRSPWPFFDRLD 146 7***********************************86555556678889**********99988887.6888899****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MDEDDAAAAR SRSPIPPPNG AGTVTIAAAA PQHQQQQTLT LALPIQRPNP SSSSREDCWS 60 EGATSALIDA WGERFLDLSR GNLKQKHWQD VADAVSSRED YTKTPRTDVQ CKNRIDTLKK 120 KYKIEKSKIS NSPAYRSPWP FFDRLDLLLG PTHKPIQPKP LRKXPPITTT TTPPPPPPPI 180 VEEEEEDDND DSSESIPPVS DRLEGVRAVA KAVARLGEKR AVTSSKASLI VLWIVDLRPV 240 SKLVRRFIWS CGSSAQILAM HLPVIMLLML IEPTGVTVAV VVVPADFKLR VGXNEVLVTG 300 NVNVVGVAVR MPEQMVFKRS H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	5e-38	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr20176.1