PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr19843.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family Trihelix
Protein Properties Length: 386aa    MW: 42565.3 Da    PI: 7.4678
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr19843.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.73.1e-13157233280
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                Wt+qe l L++    +ee+  ++ +  ++W+ vs++++   + rs++qCk kwe l  +ykki+++e+  t + ss ++
  Dr19843.1 157 WTQQEMLILVNEMAGLEEDWLKSVSSFQRWKIVSDNCAVSDVIRSSNQCKRKWELLLADYKKIRKWESH-T-RGSSYWS 233
                *******************************************************************97.3.4444665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    
MEQTEQPCIV QALPAINAAG MGTSSKQNNF KIVHYRRHAS RMESQLPCIV QALPAASNKL  60
TPTKQGTTSR KGDGTPAKQG TTSRKDTGAP TKQGTTSRKD DRAHTKEGTT SRKDNGAPTK  120
QGTTSRKDDG APPKWELAII QAPPSCRYTR SQAAPDWTQQ EMLILVNEMA GLEEDWLKSV  180
SSFQRWKIVS DNCAVSDVIR SSNQCKRKWE LLLADYKKIR KWESHTRGSS YWSLDGKRRK  240
SFGLPAVFDN QVFDSMDAVI KAQEDQMGLS KSDSEGHIAT AGVEQQMDVD TDSGSEGETW  300
SKTDEKSTDK AQETASRLED NAMRIHXILK GEIEGISDTS ETELARRQAV ELIGAFGDLT  360
GTINEFIDLI KAGEFEGIRA CKSLTP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.16e-38Trihelix family protein