PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr19215.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GATA

Protein Properties

Length: 550aa MW: 61797.8 Da PI: 7.0744

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr19215.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45	1.4e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ Dr19215.1 7 CCHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGS 41 99************66666*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MGKHGPCCHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG SLTNYTPMHA RELLGSVEVK 60 VSKVRSVQFK TKEQKLQKKN QTDGLVEIER EMPYCDQNFK KILEEDTSNR SSSGSAISFT 120 EHFGTTEASD FTGSVQSNVW ESLVPSKKRT CIARPKPSAV EKLTKDLYSI WHEQQSSYLS 180 GSSEEDLLYE SETPFGSDEI GHGGVLIRNP NSKITEEESE ASSISTDNKL YFLNEAYSGL 240 ASFPMHSQNK VTSSSHVIRP QKSTVQILED HAKRDKPSDE ILQIVRNKES PLRSTDLRDV 300 LSFEVFMXHL TXEEQQKLMR YLPPXDTTNL PERHVVLKSL FCGSQFVETC SYYQQLLAEG 360 VFDLSFVGVD VEECRILKRL VLLDLTKAKW VERYKGLKEI KCKTKKEEVG GIETMKEPCL 420 SGYSSMTPLK RLSDNQSNKI QEMKGAMRSP KRVCKSNGTN FSSGKPPLKN HGSISKAGPN 480 MDEFVDNEAS CFNVRNIFVS PADRSSMLGS LQFTDDIDSS XSDQDLLLDA PXNAPMMEAE 540 LLCQPWKLKT

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MGKHGPCCHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG SLTNYTPMHA RELLGSVEVK  60
VSKVRSVQFK TKEQKLQKKN QTDGLVEIER EMPYCDQNFK KILEEDTSNR SSSGSAISFT  120
EHFGTTEASD FTGSVQSNVW ESLVPSKKRT CIARPKPSAV EKLTKDLYSI WHEQQSSYLS  180
GSSEEDLLYE SETPFGSDEI GHGGVLIRNP NSKITEEESE ASSISTDNKL YFLNEAYSGL  240
ASFPMHSQNK VTSSSHVIRP QKSTVQILED HAKRDKPSDE ILQIVRNKES PLRSTDLRDV  300
LSFEVFMXHL TXEEQQKLMR YLPPXDTTNL PERHVVLKSL FCGSQFVETC SYYQQLLAEG  360
VFDLSFVGVD VEECRILKRL VLLDLTKAKW VERYKGLKEI KCKTKKEEVG GIETMKEPCL  420
SGYSSMTPLK RLSDNQSNKI QEMKGAMRSP KRVCKSNGTN FSSGKPPLKN HGSISKAGPN  480
MDEFVDNEAS CFNVRNIFVS PADRSSMLGS LQFTDDIDSS XSDQDLLLDA PXNAPMMEAE  540
LLCQPWKLKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-104	GATA family protein

Link Out ? help Back to Top
Ensembl	Dr19215.1