PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr19018.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family BBR-BPC
Protein Properties Length: 404aa    MW: 45224.7 Da    PI: 9.5308
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr19018.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind327.83.1e-100874041301
  GAGA_bind   1 mdddgsre..rnkgyye....paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.. 92 
                md +++re  r+k+ +     ++++ k++ +l+lm++ aerd ++++r+la+ e+kaa+aerd a l    a+ae nka++erdn+++ l+ ++++    
  Dr19018.1  87 MDGSSHREngRHKSVHTqwmmSQHQXKDQNNLKLMAIGAERDRAVQDRELAFCERKAAFAERDKAILDLHXAMAELNKAIMERDNAIAVLENARENGFyn 186
                6666666667777755545554479999*************************************************************99988776667 PP

  GAGA_bind  93 ...salpvgvqvlsgtksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkk...vkkesa 183
                   + +p   +++++t++ ++l q     pq +    + +r ++  +alp+  a ++ ++++ +k+ +++   +++ +kk+ k+++k+kk     ++ + 
  Dr19018.1 187 nnrHXCPLDHGTMKHTHNHHHLPQALPlpPQSSAAXDDpARVMHVCDALPLPAASHSGTKVHLVKRXKKEPGLQATSHKKTSKSPRKNKKAlveLSRGGG 286
                888999***********9999999544666666555556999*********9999999998888866655444444444444433333332100233333 PP

  GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpv 283
                d ++++ +k++dl+ln v++Dest+PvPvCsCtG++rqCYkWG+GGWqS+CCttt+S yPLPv++++r++R++grKmS++af+klL +LaaeG+dls p+
  Dr19018.1 287 DLNTQQIWKDQDLGLNLVAFDESTMPVPVCSCTGIPRQCYKWGSGGWQSSCCTTTLSEYPLPVVPNKRHSRVGGRKMSGSAFNKLLTRLAAEGHDLSMPL 386
                477************************************************************************************************* PP

  GAGA_bind 284 DLkdhWAkHGtnkfvtir 301
                DL+dhWAkHGtn++vti+
  Dr19018.1 387 DLRDHWAKHGTNRYVTIK 404
                *****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    
MWLVDRMKIF YRVIVICEVG KLFSFGRVAL MPTVLYAVGV LFEEKSILNS VIILSSPSSS  60
FPLNVLVLEN FSLQQAVEAF ASFYAEMDGS SHRENGRHKS VHTQWMMSQH QXKDQNNLKL  120
MAIGAERDRA VQDRELAFCE RKAAFAERDK AILDLHXAMA ELNKAIMERD NAIAVLENAR  180
ENGFYNNNRH XCPLDHGTMK HTHNHHHLPQ ALPLPPQSSA AXDDPARVMH VCDALPLPAA  240
SHSGTKVHLV KRXKKEPGLQ ATSHKKTSKS PRKNKKALVE LSRGGGDLNT QQIWKDQDLG  300
LNLVAFDEST MPVPVCSCTG IPRQCYKWGS GGWQSSCCTT TLSEYPLPVV PNKRHSRVGG  360
RKMSGSAFNK LLTRLAAEGH DLSMPLDLRD HWAKHGTNRY VTIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.13e-87BBR-BPC family protein