PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr18919.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

ARF

Protein Properties

Length: 1537aa MW: 173976 Da PI: 7.1239

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr18919.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	63.2	4.1e-20	565	665	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ + +++ ++l +d++ +W++++iyr++++r++lt+GW+ Fv++++L +gD+v+ + +++ +l+ Dr18919.1 565 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELAAKDLHDVTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSVLVIR--DEKSQLL 660 99***************************954.4444.38******************************************99884..4566668 PP EEEE- CS B3 94 vkvfr 98 ++v r Dr18919.1 661 LGVKR 665 87766 PP
2	Auxin_resp	123.8	1.2e-40	691	773	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFvv+++k++ka+++++s+GmRf+m+fete+s rr++Gtv+g+sdldpvrW+nS+Wr+L+ Dr18919.1 691 AAHAAASNSPFTIFYNPRASPSEFVVPLAKYLKAMYTQISLGMRFRMMFETEESGVRRYMGTVTGISDLDPVRWKNSQWRNLQ 773 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1537 aa Download sequence
MENHKKSQMR VRLRVTAKKR AKDGAVVGES LRKLRERGSL NSVKKLLRRE IGGLPRMSRG 60 TSSNAPEKFR NIQLQEEFDT YDDNIHWFLK LQFLKKRSKI IEIVAAKDVI FALAQSGLCA 120 AFSRNKNVQE IKISPGIMLL IFHRTPGYVP LKILSIEDGT VLKSFNHLLH RNKKVDFIEQ 180 FNEKLLVKQE NENLQILDVR NSELTEVSRT EFMTPSAFIF LYENHLFLTF RNRTVAVWNF 240 RGELVTSFED HLLWHPDCNT NNIYITSDQD LIISYCKAEE NCEDEGEVSA VGSINMSDIL 300 TGKCIAKICA NDPQLRINLR GRNETGRSSI RSTIREALED VTALFYDEDR NEIYTGNKQG 360 LIHACLQIKS HSRRLLQLLP VFRRDSGHIP APPLPAELIS GVMVIRREVE IEGEGDRKVL 420 PFERIGCLDL QRMKAPTLND FSGNPNEGER KTINSELWHA CAGPLVSLPP VGSLVVYFPQ 480 GHSEQACLSP EVAASMKKDT DSIPSYPSLS SKIVCVLHNV TLHADPETDE VYAQMTLQPV 540 NNYDKEALLA SELGLKQNKQ PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP 600 PAQELAAKDL HDVTWTFRHI YRGQPKRHLL TTGWSVFVSS KRLFAGDSVL VIRDEKSQLL 660 LGVKRANRQQ PALSSSVLPS DSMHIGILAA AAHAAASNSP FTIFYNPRAS PSEFVVPLAK 720 YLKAMYTQIS LGMRFRMMFE TEESGVRRYM GTVTGISDLD PVRWKNSQWR NLQVGWDEST 780 AGERRTRVSI WEIEPVATPF YICPPPFLRP KFFKPPGMPD DSDVENGFRK TMPWLGDDFG 840 KEAPNPFFTG FSLVQWMAMQ QNSQLMASAA QSVHFPSLAA SAVQNTSTDD PSRLLNFQTN 900 ALPPQNLQFT SKATHQXQQM EQQLALPWPQ QHQQQQQQQQ PXQQQQFSTV TLPEQSQKQQ 960 FLQQQRNPNH TQEQHHQQQH NSIVLENQSR QPQQHQKLHG QLPQNQLQEQ HLRPAVSQQN 1020 IEPAQKQHQS FSSQFLPQNQ ILNQVLPPPS FQVQQQGIPK PGNCLSNXSS FQPSSLSGIS 1080 QVQPPVEDQL FLLKQQQQQQ QQQQQQSQQQ QQQQQQQQQQ QCQSQLQLQL LQKLQQQQVL 1140 SQLNPQLQSQ LLTQLSQQSQ QQQNLQPQLL NTQFLQQKQQ IPISHTTDHV KPEPLVRANS 1200 TLSENEGPSC STSPSTNFHA TPSSLLKRHR QGPSIFNESM GVRHLDNQLQ EIQSRSDGQM 1260 KHELHCIKET DQLPHQHAVS DQLDXSSASS FCMDAAAVQE GFSLHPLCMD SDVPEDNRNN 1320 FLIGATNDGL VMNTMPTRGL SSGKDIENLL SGYGNQKDMD AEVSTAAISS QSFGIPDMSF 1380 RPGCSSDPAA NESRMYNRGM WANQPQRMRT YTKVQKRGSV GRSIDVTRYI GYDDLRRDLA 1440 RMFGIEGQLE DPHRTEWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS PVEVQQMSLD 1500 GDLASVPPVQ NQACSGSDNG NVWRGHYDDS AASFQHR

Sequence ? help Back to Top

Protein Sequence Length: 1537 aa Download sequence

MENHKKSQMR VRLRVTAKKR AKDGAVVGES LRKLRERGSL NSVKKLLRRE IGGLPRMSRG  60
TSSNAPEKFR NIQLQEEFDT YDDNIHWFLK LQFLKKRSKI IEIVAAKDVI FALAQSGLCA  120
AFSRNKNVQE IKISPGIMLL IFHRTPGYVP LKILSIEDGT VLKSFNHLLH RNKKVDFIEQ  180
FNEKLLVKQE NENLQILDVR NSELTEVSRT EFMTPSAFIF LYENHLFLTF RNRTVAVWNF  240
RGELVTSFED HLLWHPDCNT NNIYITSDQD LIISYCKAEE NCEDEGEVSA VGSINMSDIL  300
TGKCIAKICA NDPQLRINLR GRNETGRSSI RSTIREALED VTALFYDEDR NEIYTGNKQG  360
LIHACLQIKS HSRRLLQLLP VFRRDSGHIP APPLPAELIS GVMVIRREVE IEGEGDRKVL  420
PFERIGCLDL QRMKAPTLND FSGNPNEGER KTINSELWHA CAGPLVSLPP VGSLVVYFPQ  480
GHSEQACLSP EVAASMKKDT DSIPSYPSLS SKIVCVLHNV TLHADPETDE VYAQMTLQPV  540
NNYDKEALLA SELGLKQNKQ PAEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDFSMQP  600
PAQELAAKDL HDVTWTFRHI YRGQPKRHLL TTGWSVFVSS KRLFAGDSVL VIRDEKSQLL  660
LGVKRANRQQ PALSSSVLPS DSMHIGILAA AAHAAASNSP FTIFYNPRAS PSEFVVPLAK  720
YLKAMYTQIS LGMRFRMMFE TEESGVRRYM GTVTGISDLD PVRWKNSQWR NLQVGWDEST  780
AGERRTRVSI WEIEPVATPF YICPPPFLRP KFFKPPGMPD DSDVENGFRK TMPWLGDDFG  840
KEAPNPFFTG FSLVQWMAMQ QNSQLMASAA QSVHFPSLAA SAVQNTSTDD PSRLLNFQTN  900
ALPPQNLQFT SKATHQXQQM EQQLALPWPQ QHQQQQQQQQ PXQQQQFSTV TLPEQSQKQQ  960
FLQQQRNPNH TQEQHHQQQH NSIVLENQSR QPQQHQKLHG QLPQNQLQEQ HLRPAVSQQN  1020
IEPAQKQHQS FSSQFLPQNQ ILNQVLPPPS FQVQQQGIPK PGNCLSNXSS FQPSSLSGIS  1080
QVQPPVEDQL FLLKQQQQQQ QQQQQQSQQQ QQQQQQQQQQ QCQSQLQLQL LQKLQQQQVL  1140
SQLNPQLQSQ LLTQLSQQSQ QQQNLQPQLL NTQFLQQKQQ IPISHTTDHV KPEPLVRANS  1200
TLSENEGPSC STSPSTNFHA TPSSLLKRHR QGPSIFNESM GVRHLDNQLQ EIQSRSDGQM  1260
KHELHCIKET DQLPHQHAVS DQLDXSSASS FCMDAAAVQE GFSLHPLCMD SDVPEDNRNN  1320
FLIGATNDGL VMNTMPTRGL SSGKDIENLL SGYGNQKDMD AEVSTAAISS QSFGIPDMSF  1380
RPGCSSDPAA NESRMYNRGM WANQPQRMRT YTKVQKRGSV GRSIDVTRYI GYDDLRRDLA  1440
RMFGIEGQLE DPHRTEWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS PVEVQQMSLD  1500
GDLASVPPVQ NQACSGSDNG NVWRGHYDDS AASFQHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	Dr18919.1