PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr18658.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family BBR-BPC
Protein Properties Length: 290aa    MW: 32355.8 Da    PI: 10.4181
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr18658.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind278.14.2e-8512711301
  GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaav..aerdmaflqrdkalaernkalverdnkllalllvenslasalpv 97 
                md+dg    +n++ y++   lk nlglqlmss+aer +k+  ++  + ++   v   +   +f +r+ ++++       rd k+ ++ +++++       
  Dr18658.1   1 MDSDGRLGvQNWPCYQQP--LKGNLGLQLMSSVAERATKPFLADGGFLSRACXVpdPPAPLEF-MRNGWMHQ------TRDPKMQHVFPMNHG------- 84 
                9999999999******99..********************77777666555554223445999.9*******......9********998885....... PP

  GAGA_bind  98 gvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlv 197
                 ++v s+   ++ lq+     +++s ++          p++++a + ++++ +kkr+ +++ k++k+kk+kk +++  ++  +  +++++ ++ ++  lv
  Dr18658.1  85 -YHVFSEHPXANALQM-----FQPSGEK---------IPTVDEAGVRNDAP-SKKRHLGRTHKAPKQKKPKKANDTR-EEFMNGIVRPSRGRNTRNACLV 167
                .888899999998888.....4444433.........45555555544444.4447778888888888888844333.33333333455566667888** PP

  GAGA_bind 198 lngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkf 297
                +ngv+lD+s++P+PvCsCtG ++ CY+WG GGWqSaCCttt+S+yPLP+stkrrg+RiagrKm qgafkk+LekL++eG+dl np+DL+ +WAkHGtnkf
  Dr18658.1 168 INGVDLDISGIPTPVCSCTGNPQPCYRWGIGGWQSACCTTTMSMYPLPMSTKRRGTRIAGRKMTQGAFKKVLEKLTGEGHDLTNPIDLRAYWAKHGTNKF 267
                **************************************************************************************************** PP

  GAGA_bind 298 vtir 301
                vtir
  Dr18658.1 268 VTIR 271
                ***8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MDSDGRLGVQ NWPCYQQPLK GNLGLQLMSS VAERATKPFL ADGGFLSRAC XVPDPPAPLE  60
FMRNGWMHQT RDPKMQHVFP MNHGYHVFSE HPXANALQMF QPSGEKIPTV DEAGVRNDAP  120
SKKRHLGRTH KAPKQKKPKK ANDTREEFMN GIVRPSRGRN TRNACLVING VDLDISGIPT  180
PVCSCTGNPQ PCYRWGIGGW QSACCTTTMS MYPLPMSTKR RGTRIAGRKM TQGAFKKVLE  240
KLTGEGHDLT NPIDLRAYWA KHGTNKFVTI RGFLVSFAVI SHPFACILRF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.13e-70BBR-BPC family protein