PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr17622.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family GATA
Protein Properties Length: 322aa    MW: 35026.1 Da    PI: 6.8757
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr17622.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.86.4e-18240274135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Dr17622.1 240 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 274
                *******************************9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MSPGWEMGFA SSAPSFNKSH STSPAYLYDL PSSDTLRIDD LLDFTNNHED FLLSSSATTD  60
SHSLPPPDPS SSYPSDSSNI YSFPSSTTTT FPDDLYIPSE EAAELEWLSR FVDDSFADVP  120
PSSIYTPISN QQHQPNQHQH HYQHQQQQQQ QHLLIEPCSA PGRARSKRSK ANSWSMASQS  180
SSPSTSSSSS DLPSHAGKKD TNNYNNNNNN GSINSKGKSC AAGGEASGGG GGGGGGVRRC  240
THCASEKTPQ WRTGPLGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLTQ HSNSHRKVLE  300
LRRQKELAAA RSELLFHDYE VC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-44GATA family protein