PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr17331.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

Trihelix

Protein Properties

Length: 409aa MW: 46884.5 Da PI: 8.743

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr17331.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	53.1	8.6e-17	35	122	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergfe..rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ vl L+e++++++ + +r+klk+ +We++++++ + g + ++p qCk+k+e+++kry+++ + +++ ++ s ++++ q+e Dr17331.1 35 EWSEDGVLSLLEVYESKWASRNRAKLKGSDWEDIASQVsvMCSGTKafKTPSQCKNKIESMKKRYRAESALAQQ--PNCCSLWKFYPQME 122 5*********************************9999555554227********************9..556667*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence
MDANNEVETH HSHPMNAQEP SFLIPKCPDR IRRDEWSEDG VLSLLEVYES KWASRNRAKL 60 KGSDWEDIAS QVSVMCSGTK AFKTPSQCKN KIESMKKRYR AESALAQQPN CCSLWKFYPQ 120 MESLLKGVAK SPAQEIQTVK KVEADVDIEG QVQNCNQNDD HEDDDGSQTL PVNVNVSNGD 180 GNGNEKKVSK GVESDVSAMM GRDYDVNGKR RKRRRSEVAK SIVLLAQSIL EIEQARLEVY 240 KDSERMRIEA EIKRGEMELK RTEIITKTQL QIARLFSKRL RRKNKKSFNS SSRTEFNDQL 300 PEDRMVSQIA HYTPVPHGSF YAHRSKLGHL CFGILYRLLR YCCGHRCETQ IPLFSNAVAG 360 KESVVCVVCL EELRSSARCR RLRQCRHEFH AKCIDRWLVN SFACPMCIM

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence

MDANNEVETH HSHPMNAQEP SFLIPKCPDR IRRDEWSEDG VLSLLEVYES KWASRNRAKL  60
KGSDWEDIAS QVSVMCSGTK AFKTPSQCKN KIESMKKRYR AESALAQQPN CCSLWKFYPQ  120
MESLLKGVAK SPAQEIQTVK KVEADVDIEG QVQNCNQNDD HEDDDGSQTL PVNVNVSNGD  180
GNGNEKKVSK GVESDVSAMM GRDYDVNGKR RKRRRSEVAK SIVLLAQSIL EIEQARLEVY  240
KDSERMRIEA EIKRGEMELK RTEIITKTQL QIARLFSKRL RRKNKKSFNS SSRTEFNDQL  300
PEDRMVSQIA HYTPVPHGSF YAHRSKLGHL CFGILYRLLR YCCGHRCETQ IPLFSNAVAG  360
KESVVCVVCL EELRSSARCR RLRQCRHEFH AKCIDRWLVN SFACPMCIM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	209	215	KRRKRRR
2	211	215	RKRRR
3	211	216	RKRRRS
4	278	286	KRLRRKNKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-52	Trihelix family protein

Link Out ? help Back to Top
Ensembl	Dr17331.1